Genotype-environment interactions in rabbit and pig breeding for new production systems
Submitted: 2025-07-01
|Accepted: 2026-02-24
|Published: 2026-06-30
Copyright (c) 2026 Mélanie Gunia, Céline Carillier (Author)

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Downloads
Keywords:
rabbit, ranking, G×E, temperature, pen, production system
Supporting agencies:
Abstract:
This literature review explores genotype×environment (G×E) interactions in rabbit and pig production. This occurs if the difference between genotypes depends on the environment, leading to re-ranking or scale effect between genotypes. High temperatures and seasonal variations strongly influence reproductive, growth and feed efficiency performance, with moderate genetic correlations between environments. Animal lines show different sensitivities to heat stress, underlining the importance of selecting animals under conditions that reflect their future rearing environment. Rabbit behaviour and performance differ according to the type of housing, such as cages, pens or access to a grazing area. While G×E interactions are limited for growth traits, they are more pronounced for behaviours, particularly in enriched systems. In swine production, organic systems or more restrictive production environments reveal significant G×E interactions for growth and feed efficiency. High-fibre diets or diets including co-products also lead to differences in feed efficiency and body composition, with re-ranking between genotypes. These results show that G×E interactions influence a variety of traits depending on rearing conditions, and require adaptation of selection strategies. Future production systems, subject to increased climatic constraints and more extensive practices, must integrate these interactions. Genetic selection will have to be based on evaluations in representative environments to ensure that the animals are adapted to the challenges of climate change and new societal expectations.
References:
Brandt H., Werner D.N., Baulain U., Brade W., Weissmann F. 2010. Genotype–environment interactions for growth and carcass traits in different pig breeds kept under conventional and organic production systems. Animal, 4: 535-544. https://doi.org/10.1017/S1751731109991509
Cao L., Liu H., Mulder H.A., Henryon M., Thomasen J.R., Kargo M., Sørensen A.C. 2020. Genomic breeding programs realize larger benefits by cooperation in the presence of genotype×environment interaction than conventional breeding programs. Front. Genet. 11: 251. https://doi.org/10.3389/fgene.2020.00251
Chodová D., Tůmová E., Martinec M., Bízková Z., Skřivanová V., Volek Z., Zita L. 2014. Effect of housing system and genotype on rabbit meat quality. Czech J. Anim. Sci., 59: 190-199. https://doi.org/10.17221/7343-CJAS
Dalle Zotte A., Szendrő K., Gerencsér Z., Szendrő Z., Cullere M., Odermatt M., Radnai I., Matics Z. 2015. Effect of genotype, housing system and hay supplementation on carcass traits and meat quality of growing rabbits. Meat Sci., 110: 126-134. https://doi.org/10.1016/j.meatsci.2015.07.012
Depres E., Theau-Clement M., Lorvelec O. 1996. Effect of the genotype, day length, season and physiological stage on the reproductive performance of doe rabbits reared in Guadeloupe (F.W.I.). World Rabbit Sci., 4: 181-185. https://doi.org/10.4995/wrs.1996.292
Déru V., Bouquet A., Hassenfratz C., Blanchet B., Carillier-Jacquin C., Gilbert H. 2020. Impact of a high-fibre diet on genetic parameters of production traits in growing pigs. Animal, 14: 2236-2245. https://doi.org/10.1017/S1751731120001275
Desouky A.T., EL-Gendi G.M., Iraqi M.M., Rashad S.A. 2021. Influence of genotypes, season of birth, parity order and the interactions between them on litter traits and body weight measurements of rabbits. Ann. Agric. Sci., Moshtohor 59: 399-408. https://doi.org/10.21608/assjm.2021.186316
Falconer D.S., 1952. The problem of environment and selection. Am. Nat., 86: 293-298. https://doi.org/10.1086/281736
Fetiveau M., Savietto D., Bannelier C., Fillon V., Despeyroux M., Pujol S., Fortun-Lamothe L. 2023. Effect of outdoor grazing area size and genotype on space and pasture use, behaviour, health, and growth traits of weaned rabbits. Anim. Open Space, 2: 100038. https://doi.org/10.1016/j.anopes.2023.100038
Früh B., Bochicchio D., Edwards S., Hegelund L., Leeb C., Sundrum A., Werne S., Wiberg S., Prunier A. 2014. Description of organic pig production in Europe. Organic Agric., 4: 83-92. https://doi.org/10.1007/s13165-013-0056-9
García Casco J.M., Muñoz Muñoz M., Silio López L., Rodríguez Valdovinos C. 2014. Genotype by environment interaction for carcass traits and intramuscular fat content in heavy Iberian pigs fattened in two different free-range systems. Span. J. Agric. Res., 12: 388-395. https://doi.org/10.5424/sjar/2014122-4840
Gidenne T., Fortun-Lamothe L., Huang Y., Savietto D. 2024. Pastured rabbit systems and organic certification: European union regulations and technical and economic performance in France. World Rabbit Sci., 32: 83-97. https://doi.org/10.4995/wrs.2024.20894
Godinho R.M., Bastiaansen J.W.M., Sevillano C.A., Silva F.F., Guimarães S.E.F., Bergsma R. 2018. Genotype by feed interaction for feed efficiency and growth performance traits in pigs. J. Anim. Sci., 96: 4125-4135. https://doi.org/10.1093/jas/sky304
Godinho R.M., Bergsma R., Silva F.F., Sevillano C.A., Knol E.F., Komen H., Guimarães S.E.F., Lopes M.S., Bastiaansen J.W.M. 2019. Genetic correlations between growth performance and carcass traits of purebred and crossbred pigs raised in tropical and temperate climates. J. Anim. Sci., 97: 3648-3657. https://doi.org/10.1093/jas/skz229
Gourdine J.-L., Riquet J., Rosé R., Poullet N., Giorgi M., Billon Y., Renaudeau D., Gilbert H. 2019. Genotype by environment interactions for performance and thermoregulation responses in growing pigs. J. Anim. Sci., 97: 3699-3713. https://doi.org/10.1093/jas/skz245
Gunia M., David I., Hurtaud J., Maupin M., Gilbert H., Garreau H. 2018. Genetic parameters for resistance to non-specific diseases and production traits measured in challenging and selection environments; application to a rabbit case. Front. Genet., 9: 467. https://doi.org/10.3389/fgene.2018.00467
Hayes B.J., Daetwyler H.D., Goddard M.E. 2016. Models for genome×environment interaction: examples in livestock. Crop Sci., 56: 2251-2259. https://doi.org/10.2135/cropsci2015.07.0451
Krunt O., Zita L., Kraus A., Moravcsíková Á., Frühauf Kolářová M., Bartoš L. 2023. Effects of genotype and housing system on rabbit does’ aggressive behaviours and injuries in smallholding conditions. Animals, 13: 1357. https://doi.org/10.3390/ani13081357
Lewis C.R.G., Bunter K.L. 2011. Effects of seasonality and ambient temperature on genetic parameters for production and reproductive traits in pigs. Anim. Prod. Sci., 51: 615. https://doi.org/10.1071/AN10265
Main R.G., Dritz S.S., Tokach M.D., Goodband R.D., Nelssen J.L. 2004. Increasing weaning age improves pig performance in a multisite production system. J. Animal Sci., 82: 1499-1507. https://doi.org/10.2527/2004.8251499x
Mugnai C., Dal Bosco A., Moscati L., Battistacci L., Mourvaki E., Cardinali R., Castellini C. 2008a. Pasture availability and genotype effects on rabbits: 1. Health and welfare. In Proc: 9th World Rabbit Congress, 10-13 June 2008, Verona, Italy,1207-1212.
Mugnai C., Finzi A., Zamparini C., Dal Bosco A., Mourvaki E., Castellini C. 2008b. Pasture availability and genotype effects on rabbits: 3. Performance, carcass and meat characteristics. In Proc: 9th World Rabbit Congress, 10-13 June 2008, Verona, Italy,1405-1410.
Mugnai C., Dal Bosco A., Cardinali R., Rebollar P.G., Moscati L., Castellini C. 2014. Effect of pasture availability and genotype on welfare, immune function, performance and meat characteristics of growing rabbits. World Rabbit Sci., 22: 29-39. https://doi.org/10.4995/wrs.2014.1342
Mulder H.A., Veerkamp R.F., Ducro B.J., Van Arendonk J.A.M., Bijma P. 2006. Optimization of dairy cattle breeding programs for different environments with genotype by environment interaction. J. Dairy Sci., 89: 1740-1752. https://doi.org/10.3168/jds.S0022-0302(06)72242-1
Ozella L., Sartore S., Macchi E., Manenti I., Mioletti S., Miniscalco B., Crosetto R., Ponzio P., Fiorilla E., Mugnai C. 2024. Behaviour and welfare assessment of autochthonous slowgrowing rabbits: The role of housing systems. PLoS ONE, 19:e0307456. https://doi.org/10.1371/journal.pone.0307456
Ragab M., Mostfa S.M., El-Kholy K.H., Radwan L.M., El-Shafie A., El-Ratel I.T. 2021. Effects of genotype and weaning age interaction on growth traits in rabbits. World’s Veterinary J., 11: 249-256. https://doi.org/10.54203/scil.2021.wvj32
Ragab M., Elkhaiat I., Younis H., Ahmed M., Helal M. 2022. Genotype by heat conditions interaction effects on growth and litter traits in rabbits. Front. Vet. Sci., 9: 1018625. https://doi.org/10.3389/fvets.2022.1018625
Renaudeau D., Kerdoncuff M., Anaïs C., Gourdine J.L. 2008. Effect of temperature level on thermal acclimation in Large White growing pigs. Animal, 2: 1619-1626. https://doi.org/10.1017/S1751731108002814
Robertson A. 1959. The sampling variance of the genetic correlation coefficient. Biometrics, 15: 469. https://doi.org/10.2307/2527750
Rosé R., Gilbert H., Loyau T., Giorgi M., Billon Y., Riquet J., Renaudeau D., Gourdine J.L. 2017. Interactions between sire family and production environment (temperate vs. tropical) on performance and thermoregulation responses in growing pigs. J. Anim. Sci., 95: 4738-4751. https://doi.org/10.2527/jas2017.1611
Sánchez J.P., Piles M. 2013. Sources of individual variation to heat tolerance in a rabbit line. J. Anim. Sci., 91: 1059-1066. https://doi.org/10.2527/jas.2012-5457
Savietto D., Friggens N.C., Pascual J.J. 2015. Reproductive robustness differs between generalist and specialist maternal rabbit lines: the role of acquisition and allocation of resources. Genet. Sel. Evol., 47: 2. https://doi.org/10.1186/s12711-014-0073-5
Sevillano C.A., Mulder H.A., Rashidi H., Mathur P.K., Knol E.F. 2016. Genetic variation for farrowing rate in pigs in response to change in photoperiod and ambient temperature. J. Anim. Sci., 94: 3185-3197. https://doi.org/10.2527/jas.2015-9915
Smith C., Banos G. 1991. Selection within and across populations in livestock improvement. J. Anim. Sci., 69: 2387. https://doi.org/10.2527/1991.6962387x
Szendrő K., Szendrő Zs., Matics Zs., Dalle Zotte A., Odermatt M., Radnai I., Gerencsér Zs. 2015. Effect of genotype, housing system and hay supplementation on performance and ear lesions of growing rabbits. Livest. Sci., 174: 105-112. https://doi.org/10.1016/j.livsci.2015.01.008
Usala M., Macciotta N.P.P., Bergamaschi M., Maltecca C., Fix J., Schwab C., Shull C., Tiezzi F. 2021. Genetic parameters for tolerance to heat stress in crossbred swine carcass traits. Front. Genet., 11: 612815. https://doi.org/10.3389/fgene.2020.612815
Vostrý L., Vydrová H., Dokoupilová A., Mach K., Janda K. 2010. Estimation of the genotype × environment interactions in the broiler rabbits. Sci. Agric. Bohem., 41: 92-97.
Wallenbeck A., Rydhmer L., Lundeheim N. 2009. G×E interactions for growth and carcass leanness: Re-ranking of boars in organic and conventional pig production. Livest. Sci., 123: 154-160. https://doi.org/10.1016/j.livsci.2008.11.003
Zeferino C.P., Moura A.S.A.M.T., Fernandes S., Kanayama J.S., Scapinello C., Sartori J.R. 2011. Genetic group×ambient temperature interaction effects on physiological responses and growth performance of rabbits. Livest. Sci., 140: 177-183. https://doi.org/10.1016/j.livsci.2011.03.027




